2008

          Chan, J.W., Taylor, D.S., Lane, S.M., Zwerdling, T., Tuscano, J. & Huser, T. Nondestructive identification of individual leukemia cells by laser trapping Raman spectroscopy. Anal. Chem. 80, 2180-2187 (2008).

            Kim, B.S., Lee, C.C.I., Christensen, J.E., Huser, T.R., Chan, J.W. & Tarantal, A.F. Growth, differentiation, and biochemical signatures of rhesus monkey mesenchymal stem cells. Stem Cells and Development 17, 185-198 (2008).

Bogan, M.J., Benner, W.H., Boutet, S., Rohner, U., Frank, M., Barty, A., Seibert, M.M., Maia, F., Marchesini, S., Bajt, S., Woods, B., Riot, V., Hau-Riege, S.P., Svenda, M., Marklund, E., Spiller, E., Hajdu, J. & Chapman, H.N. Single particle X-ray diffractive imaging. Nano Letters 8, 310-316 (2008).

            Starodub, D., Rez, P., Hembree, G., Howells, M., Shapiro, D., Chapman, H.N., Fromme, P., Schmidt, K., Weierstall, U., Doak, R.B. & Spence, J.C.H. Dose, exposure time and resolution in serial X-ray crystallography. Journal of Synchrotron Radiation 15, 62-73 (2008).

Wang, C.Y., Miyazaki, N., Yamashita, T., Higashiura, A., Nakagawa, A., Li, T.C., Takeda, N., Xing, L., Hjalmarsson, E., Friberg, C., Liou, D.M., Sung, Y.J., Tsukihara, T., Matsuura, Y., Miyamura, T. & Cheng, R.H. Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle. Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 64, 318-322 (2008).

            Srivastava, I.K., Kan, E., Sun, Y., Sharma, V.A., Cisto, J., Burke, B., Lian, Y., Hilt, S., Biron, Z., Hartog, K., Stamatatos, L., Cheng, R.H., Ulmer, J.B. & Barnett, S.W. Comparative evaluation of trimeric envelope glycoproteins derived from subtype C and BHIV-1 R5 isolates. Virology 372, 273-290 (2008).

Hsiung, P.L., Hardy, J., Friedland, S., Soetikno, R., Du, C.B., Wu, A.P., Sahbaie, P., Crawford, J.M., Lowe, A.W., Contag, C.H. & Wang, T.D. Detection of colonic dysplasia in vivo using a targeted heptapeptide and confocal microendoscopy. Nat. Med. 14, 454-458 (2008).

            Schie, I.W., Weeks, T., McNerney, G.P., Fore, S., Sampson, J.K., Wachsmann-Hogiu, S., Rutledge, J.C. & Huser, T. Simultaneous forward and epi-CARS microscopy with a single detector by time-correlated single photon counting. Opt. Express 16, 2168-2175 (2008).

Sanii, B., Smith, A.M., Butti, R., Brozell, A.M. & Parikh, A.N. Bending membranes on demand: Fluid phospholipid bilayers on topographically deformable substrates. Nano Letters 8, 866-871 (2008).

            Gerth, C., Zawadzki, R.J., Werner, J.S. & Heon, E. Retinal morphology in patients with BBS1 and BBS10 related Bardet-Biedl Syndrome evaluated by Fourier-domain optical coherence tomography. Vision Res. 48, 392-399 (2008).

            Fei, Y.Y., Landry, J.P., Sun, Y.S., Zhu, X.D., Luo, J.T., Wang, X.B. & Lam, K.S. A novel high-throughput scanning microscope for label-free detection of protein and small-molecule chemical microarrays. Rev. Sci. Instrum. 79 (2008).

            Taguenang, J.M., Kassu, A., Ruffin, P.B., Brantley, C., Edwards, E. & Sharma, A. Reversible UV degradation of PMMA plastic optical fibers. Opt. Commun. 281, 2089-2092 (2008).

            Sun, Y.H., Liu, R., Elson, D.S., Hollars, C.W., Jo, J.A., Park, J., Sun, Y. & Marcu, L. Simultaneous time- and wavelength-resolved fluorescence spectroscopy for near real-time tissue diagnosis. Opt. Lett. 33, 630-632 (2008).

            Gustafsson, M.G., Shao, L., Carlton, P.M., Wang, C.J., Golubovskaya, I.N., Cande, W.Z., Agard, D.A. & Sedat, J.W. in Biophysical Journal (2008).

            Weierstall, U., Doak, R.B., Spence, J.C.H., Starodub, D., Shapiro, D., Kennedy, P., Warner, J., Hembree, G.G., Fromme, P. & Chapman, H.N. Droplet streams for serial crystallography of proteins. Exp. Fluids 44, 675-689 (2008).

            Cho, S.B., Liu, C., Gustafsson, M. & Kim, D.Y. Vector wave analysis for nonnormal incident rays in epimicroscopic refractive index profile measurements. Appl. Optics 47, 157-163 (2008).

Pircher, M., Zawadzki, R.J., Evans, J.W., Werner, J.S. & Hitzenberger, C.K. Simultaneous imaging of human cone mosaic with adaptive optics enhanced scanning laser ophthalmoscopy and high-speed transversal scanning optical coherence tomography. Opt. Lett. 33, 22-24 (2008).

2007

            Chan, J.W., Winhold, H., Corzett, M.H., Ulloa, J.M., Cosman, M., Balhorn, R. & Huser, T. Monitoring dynamic protein expression in living E-coli. Bacterial Celts by laser tweezers raman spectroscopy. Cytometry Part A 71A, 468-474 (2007).

            Bogan, M.J., Benner, W.H., Hau-Riege, S.P., Chapman, H.N. & Frank, M. Aerosol sample preparation methods for X-ray diffractive imaging: Size-selected spherical nanoparticles on silicon nitride foils. Journal of Aerosol Science 38, 1119-1128 (2007).

            Chapman, H.N., Hau-Riege, S.P., Bogan, M.J., Bajt, S., Barty, A., Boutet, S., Marchesini, S., Frank, M., Woods, B.W., Benner, W.H., London, R.A., Rohner, U., Szoke, A., Spiller, E., Moller, T., Bostedt, C., Shapiro, D.A., Kuhlmann, M., Treusch, R., Plonjes, E., Burmeister, F., Bergh, M., Caleman, C., Huldt, G., Seibert, M.M. & Hajdu, J. Femtosecond time-delay X-ray holography. Nature 448, 676-679 (2007).

            Gaffney, K.J. & Chapman, H.N. Imaging atomic structure and dynamics with ultrafast X-ray scattering. Science 316, 1444-1448 (2007).

            Coleman, M.A. Model systems and current approaches in biodosimetry. Environ. Mol. Mutagen. 48, 542-542 (2007).

            Vogel, A., Chernomordik, V.V., Riley, J.D., Hassan, M., Amyot, F., Dasgeb, B., Demos, S.G., Pursley, R., Little, R.F., Yarchoan, R., Tao, Y. & Gandjbakhche, A.H. Using noninvasive multispectral imaging to quantitatively assess tissue vasculature. J. Biomed. Opt. 12 (2007).

Carter, J.D., Cheng, N.N., Qu, Y.Q., Suarez, G.D. & Guo, T. Nanoscale energy deposition by x-ray absorbing nanostructures. J. Phys. Chem. B 111, 11622-11625 (2007).

            Ly, S., McNerney, G., Fore, S., Chan, J. & Huser, T. Time-gated single photon counting enables separation of CARS microscopy data from multiphoton-excited tissue autofluorescence. Opt. Express 15, 16839-16851 (2007).

            Lleo, A., Naiyanetr, P., Kenny, T.P., Selmi, C., Van de Water, J., Invernizzi, P., Zuin, M., Huser, T., Podda, M. & Gershwin, M.E. Intercellular transport and transilocation of IgA AMA in primary biliary cirrhosis. Hepatology 46, 549A-550A (2007).

Fore, S., Laurence, T.A., Hollars, C.W. & Huser, T. Counting constituents in molecular complexes by fluorescence photon antibunching. IEEE J. Sel. Top. Quantum Electron. 13, 996-1005 (2007).

            Su, Y.S. & Lagarias, J.C. Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell 19, 2124-2139 (2007).

            Rockwell, N.C. & Lagarias, J.C. Flexible mapping of homology onto structure with homolmapper. BMC Bioinformatics 8, 1-13 (2007).

            Tu, S.L., Rockwell, N.C., Lagarias, J.C. & Fisher, A.J. Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements. Biochemistry 46, 1484-1494 (2007).

Brozell, A.M., Muha, M.A., Abed-Amoli, A., Bricarello, D. & Parikh, A.N. Patterned when wet: Environment-dependent multifunctional patterns within amphiphilic colloidal crystals. Nano Letters 7, 3822-3826 (2007).

            Sanii, B. & Parikh, A.N. Surface-energy dependent spreading of lipid monolayers and bilayers. Soft Matter 3, 974-977 (2007).

            Yang, T.H., Yee, C.K., Amweg, M.L., Singh, S., Kendall, E.L., Dattelbaum, A.M., Shreve, A.P., Brinker, C.J. & Parikh, A.N. Optical detection of ion-channel-induced proton transport in supported phospholipid bilayers. Nano Letters 7, 2446-2451 (2007).

            Eiselein, L., Wilson, D.W., Lame, M.W. & Rutledge, J.C. Lipolysis products from triglyceride-rich lipoproteins increase endothelial permeability, perturb zonula occludens-1 and F-actin, and induce apoptosis. Am. J. Physiol.-Heart Circul. Physiol. 292, H2745-H2753 (2007).

            Aung, H.H., Gohil, K., Kota, R.S. & Rutledge, J.C. Genome-wide response of human aortic endothelial cell to triglyceride-rich lipoprotein lypolysis products. Arterioscler. Thromb. Vasc. Biol. 27, E59-E59 (2007).

            Higgins, L.J., Wang, L.M., Ting, H.J., Simon, S.I. & Rutledge, J.C. VLDL lipolysis products increase monocyte adhesion to endothelial cells by upregulation of CD11b and CD49d integrins. Arterioscler. Thromb. Vasc. Biol. 27, E68-E68 (2007).

            Wang, L.M., Gill, R., Newman, J. & Rutledge, J.C. Triglyceride-rich lipoprotein lipolysis products induce endothelial cell inflammation that is mediated by oxidized lipids. Arterioscler. Thromb. Vasc. Biol. 27, E72-E72 (2007).

            Sardar, D.K., Dee, D.M., Nash, K.L., Yow, R.M., Gruber, J.B. & Debnath, R. Optical characterization and ligand-field splitting of Er3+(4f(11)) energy levels in a fluorine containing tellurite glass. Journal of Applied Physics 102 (2007).

            Miyawaki, A. & Schnitzer, M.J. New technologies for neuroscience. Curr. Opin. Neurobiol. 17, 565-566 (2007).

            Cocker, E.D., Flusberg, B.A., Piyawattanametha, W., Jung, J.C., Baretto, R.P.J., Ko, T.H., Ra, H., Lee, D., Solgaard, O. & Schnitzer, M.J. Portable forms of fiber-optic one- and two-photon fluorescence microendoseopy towards imaging in freely moving mice. Biophys. J., 154A-154A (2007).

            Ko, T.H., Jung, J.C., Barretto, R.P.J., Wang, T.J., Capps, G., Recht, L. & Schnitzer, M.J. Long-term cellular level imaging of deep brain areas using one- and two-photon fluorescence microendoscopy. Biophys. J., 155A-155A (2007).

            Spence, J. Imaging technology - Harmonic pictures in a flash. Nature 449, 553-554 (2007).

            Schipper, M.L., Cheng, Z., Lee, S.W., Bentolila, L.A., Iyer, G., Rao, J.H., Chen, X.Y., Wul, A.M., Weiss, S. & Gambhirl, S.S. MicroPET-based biodistribution of quantum dots in living mice. J. Nucl. Med. 48, 1511-1518 (2007).

            Tsay, J.M., Trzoss, M., Shi, L.X., Kong, X.X., Selke, M., Jung, M.E. & Weiss, S. Singlet oxygen production by peptide-coated quantum dot-photosensitizer conjugates. J. Am. Chem. Soc. 129, 6865-6871 (2007).

            Iyer, G., Pinaud, F., Tsay, J. & Weiss, S. Solubilization of quantum dots with a recombinant peptide from Escherichia coli. Small 3, 793-798 (2007).

            Fore, S., Yuen, Y., Hesselink, L. & Huser, T. Pulsed-interleaved excitation FRET measurements on single duplex DNA molecules inside C-shaped nanoapertures. Nano Letters 7, 1749-1756 (2007).

Kam, Z., Kner, P., Agard, D. & Sedat, J.W. Modelling the application of adaptive optics to wide-field microscope live imaging. J. Microsc.-Oxf. 226, 33-42 (2007).

            Ra, H., Piyawattanametha, W., Taguchi, Y., Lee, D., Mandella, M.J. & Solgaard, O. Two-dimensional MEMS scanner for dual-axes confocal microscopy. J. Microelectromech. Syst. 16, 969-976 (2007).

            Liu, J.T.C., Mandella, M.J., Ra, H., Wong, L.K., Solgaard, O., Kino, G.S., Piyawattanametha, W., Contag, C.H. & Wang, T.D. Miniature near-infrared dual-axes confocal microscope utilizing a two-dimensional microelectromechanical systems scanner. Opt. Lett. 32, 256-258 (2007).

            Larabi, M., Mackanos, M., Shinde, R., Contag, C. & Guccione, S. Temperature sensitive liposomes for local drug delivery using focused ultrasound. Mol. Cancer Ther. 6, 3561S-3561S (2007).

            Wender, P.A., Goun, E.A., Jones, L.R., Pillow, T.H., Rothbard, J.B., Shinde, R. & Contag, C.H. Real-time analysis of uptake and bioactivatable cleavage of luciferin-transporter conjugates in transgenic reporter mice. Proc. Natl. Acad. Sci. U. S. A. 104, 10340-10345 (2007).

            Balhorn, R. The protamine family of sperm nuclear proteins. Genome Biol. 8 (2007).

            DeNardo, G.L., Hok, S., Natarajan, A., Cosman, M., DeNardo, S.J., Lightstone, F.C., Mirick, G.R., Yuan, A., Perkins, J., Sysko, V.V., Lehmann, J. & Balhorn, R.L. Characteristics of dimeric (bis) bidentate selective high affinity ligands as HLA-DR10 beta antibody mimics targeting non-Hodgkin's lymphoma. Int. J. Oncol. 31, 729-740 (2007).

            Balhorn, R., Hok, S., Burke, P.A., Lightstone, F.C., Cosman, M., Zemla, A., Mirick, G., Perkins, J., Natarajan, A., Corzett, M., DeNardo, S., Albrecht, H., Gregg, J.P. & DeNardo, G.L. Selective high-affinity ligand antibody mimics for cancer diagnosis and therapy: Initial application to Lymphoma/Leukemia. Clin. Cancer Res. 13, 5621S-5628S (2007).

            Albrecht, H., Cosman, M., Ngu-Schwernlein, M., Corzett, M., Curran, K.W., Dolan, C., Fang, X.M., DeNardo, S.J., DeNardo, G.L. & Balhorn, R. Recombinant expression of the beta-subunit of HLA-DR10 for the selection of novel lymphoma targeting molecules. Cancer Biother. Radiopharm. 22, 531-542 (2007).

            DeNardo, G.L., Natarajan, A., Hok, S., Perkins, J., Cosman, M., DeNardo, S.J., Lightstone, F.C., Mirick, G.R., Miers, L.A. & Balhorn, R.L. Pharmacokinetic characterization in xenografted mice of a series of first-generation mimics for HLA-DR antibody, Lym-1, as carrier molecules to image and treat lymphoma. J. Nucl. Med. 48, 1338-1347 (2007).

            Baer, G.M., Iv, W.S., Wilson, T.S., Benett, W.J., Matthews, D.L., Hartman, J. & Maitland, D.J. Fabrication and in vitro deployment of a laser-activated shape memory polymer vascular stent. Biomed. Eng. Online 6 (2007).

            Li, P.P., Nguyen, A.P., Qu, Q.M., Jafri, Q.H., Aungsumart, S., Cheng, R.H. & Kasamatsu, H. Importance of calcium-binding site 2 in simian virus 40 infection. J. Virol. 81, 6099-6105 (2007).

            Wu, S.R., Haag, L., Hammar, L., Wu, B., Garoft, H., Xing, L., Murata, K. & Cheng, R.H. The dynamic envelope of a fusion Class II virus - Prefusion stages of Semliki Forest virus revealed by electron cryomicroscopy. J. Biol. Chem. 282, 6752-6762 (2007).

            Wu, H., Hollars, C., Huser, T., Parikh, A. & Yeh, Y. Characterization of lipid rafts by single-vesicle raman spectroscopy. Biophys. J., 573A-573A (2007).

            Smith, A.M., Huser, T. & Parikh, A.N. Dynamic recompartmentalization of supported lipid bilayers using focused femtosecond laser pulses. J. Am. Chem. Soc. 129, 2422-+ (2007).

            Sapuri-Butti, A.R., Butti, R.C. & Parikh, A.N. Characterization of supported membranes on topographically patterned polymeric elastomers and their applications to microcontact printing. Langmuir 23, 12645-12654 (2007).

Gojova, A., Guo, B., Kota, R.S., Rutledge, J.C., Kennedy, I.M. & Barakat, A.I. Induction of inflammation in vascular endothelial cells by metal oxide nanoparticles: Effect of particle composition. Environ. Health Perspect. 115, 403-409 (2007).

            Hom, E.F.Y., Marchis, F., Lee, T.K., Haase, S., Agard, D.A. & Sedat, J.W. AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data. J. Opt. Soc. Am. A-Opt. Image Sci. Vis. 24, 1580-1600 (2007).

            Yao, S. & Bakajin, O. Improvements in mixing time and mixing uniformity in devices designed for studies of protein folding kinetics. Anal. Chem. 79, 5753-5759 (2007).

            Lapidus, L.J., Yao, S.H., McGarrity, K.S., Hertzog, D.E., Tubman, E. & Bakajin, O. Protein hydrophobic collapse and early folding steps observed in a microfluidic mixer. Biophys. J. 93, 218-224 (2007).

            Hok, S., Natarajan, A., Balhorn, R., DeNardo, S.J., DeNardo, G.L. & Perkins, J. Synthesis and radiolabeling of selective high-affinity ligands designed to target non-Hodgkin's lymphoma and leukemia. Bioconjugate Chem. 18, 912-921 (2007).

            Ortega, J., Maitland, D., Wilson, T., Tsai, W., Savas, O. & Saloner, D. Vascular dynamics of a shape memory polymer foam aneurysm treatment technique. Ann. Biomed. Eng. 35, 1870-1884 (2007).

            Maitland, D.J., Small, W., Ortega, J.M., Buckley, P.R., Rodriguez, J., Hartman, J. & Wilson, T.S. Prototype laser-activated shape memory polymer foam device for embolic treatment of aneurysms. J. Biomed. Opt. 12 (2007).

Small, W., Wilson, T.S., Buckley, P.R., Benett, W.J., Loge, J.A., Hartman, J. & Maitland, D.J. Prototype fabrication and preliminary in vitro testing of a shape memory endovascular thrombectomy device. IEEE Trans. Biomed. Eng. 54, 1657-1666 (2007).

            Ortega, J.M., Small, W., Wilson, T.S., Benett, W.J., Loge, J.M. & Maitland, D.J. A shape memory polymer dialysis needle adapter for the reduction of hemodynamic stress within arteriovenous grafts. IEEE Trans. Biomed. Eng. 54, 1722-1724 (2007).

            Wilson, T.S., Bearinger, J.P., Herberg, J.L., Marion, J.E., Wright, W.J., Evans, C.L. & Maitland, D.J. Shape memory polymers based on uniform aliphatic urethane networks. J. Appl. Polym. Sci. 106, 540-551 (2007).

            Hartman, J., Small, W., Wilson, T.S., Brock, J., Buckley, P.R., Benett, W.J., Loge, J.M. & Maitland, D.J. Embolectomy in a rabbit acute arterial occlusion model using a novel electromechanical extraction device. Am. J. Neuroradiol. 28, 872-874 (2007).

            Small, W., Buckley, P.R., Wilson, T.S., Benett, W.J., Hartman, J., Saloner, D. & Maitland, D.J. Shape memory polymer stent with expandable foam: A new concept for endovascular embolization of fusiform aneurysms. IEEE Trans. Biomed. Eng. 54, 1157-1160 (2007).

Marchesini, S. Phase retrieval and saddle-point optimization. J. Opt. Soc. Am. A-Opt. Image Sci. Vis. 24, 3289-3296 (2007).

            Marchesini, S. Invited article: A unified evaluation of iterative projection algorithms for phase retrieval (vol 78, art no 011301, 2007). Rev. Sci. Instrum. 78 (2007).

            Perkins, J., Parida, S. & Clavijo, A. Use of a standardized bovine serum panel to evaluate a multiplexed nonstructural protein antibody assay for serological surveillance of foot-and-mouth disease. Clin. Vaccine Immunol. 14, 1472-1482 (2007).

            Bower, B.A., Zhao, M.T., Zawadzki, R.J. & Izatt, J.A. Real-time spectral domain Doppler optical coherence tomography and investigation of human retinal vessel autoregulation. J. Biomed. Opt. 12 (2007).

            Zawadzki, R.J., Choi, S.S., Jones, S.M., Oliver, S.S. & Werner, J.S. Adaptive optics-optical coherence tomography: optimizing visualization of microscopic retinal structures in three dimensions. J. Opt. Soc. Am. A-Opt. Image Sci. Vis. 24, 1373-1383 (2007).