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CBST Publications

by Andrew Lague — last modified 06/19/2009 10:39


2008-2009

  1. Argov, N., Wachsmann-Hogiu, S., Freeman, S.L., Huser, T., Lebrilla, C.B. & German, J.B. Size-dependent lipid content in human milk fat globules. Journal of Agricultural and Food Chemistry 56, 7446-7450 (2008).    
  2. Baek, H.G., Liu, R.W. & Lam, K.S. Development of Hydrogel TentaGel Shell-Core Beads for Ultrahigh Throughput Solution-Phase Screening of Encoded OBOC Combinatorial Small Molecule Libraries. Journal of Combinatorial Chemistry 11, 91-102 (2009).
  3. Bajt, S., Chapman, H.N., Spiller, E.A., Alameda, J.B., Woods, B.W., Frank, M., Bogan, M.J., Barty, A., Boutet, S., Marchesini, S., Hau-Riege, S.P., Hajdu, J. & Shapiro, D. Camera for coherent diffractive imaging and holography with a soft-x-ray free-electron laser. Applied Optics 47, 1673-1683 (2008).
  4. Barty, A., Boutet, S., Bogan, M.J., Hau-Riege, S., Marchesini, S., Sokolowski-Tinten, K., Stojanovic, N., Tobey, R., Ehrke, H., Cavalleri, A., Duesterer, S., Frank, M., Bajt, S., Woods, B.W., Seibert, M.M., Hajdu, J., Treusch, R. & Chapman, H.N. Ultrafast single-shot diffraction imaging of nanoscale dynamics. Nature Photonics 2, 415-419 (2008).
  5. Barty, A., Marchesini, S., Chapman, H.N., Cui, C., Howells, M.R., Shapiro, D.A., Minor, A.M., Spence, J.C.H., Weierstall, U., Ilavsky, J., Noy, A., Hau-Riege, S.P., Artyukhin, A.B., Baumann, T., Willey, T., Stolken, J., van Buuren, T. & Kinney, J.H. Three-dimensional coherent x-ray diffraction imaging of a ceramic nanofoam: Determination of structural deformation mechanisms. Physical Review Letters 101 (2008).
  6. Bearinger, J.P., Stone, G., Hiddessen, A.L., Dugan, L.C., Wu, L.G., Hailey, P., Conway, J.W., Kuenzler, T., Feller, L., Cerritelli, S. & Hubbell, J.A. Phototocatalytic Lithography of Poly(propylene sulfide) Block Copolymers: Toward High-Throughput Nanolithography for Biomolecular Arraying Applications. Langmuir 25, 1238-1244 (2009).
  7. Beller, H.R., Legler, T.C., Bourguet, F., Letain, T.E., Kane, S.R. & Coleman, M.A. Identification of c-type cytochromes involved in anaerobic, bacterial U(IV) oxidation. Biodegradation 20, 45-53 (2009).
  8. Blanchette, C.D., Cappuccio, J.A., Kuhn, E.A., Segelke, B.W., Benner, W.H., Chromy, B.A., Coleman, M.A., Bench, G., Hoeprich, P.D. & Sulchek, T.A. Atomic force microscopy differentiates discrete size distributions between membrane protein containing and empty nanolipoprotein particles. Biochimica Et Biophysica Acta-Biomembranes 1788, 724-731 (2009).
  9. Blanchette, C.D., Law, R., Benner, W.H., Pesavento, J.B., Cappuccio, J.A., Walsworth, V., Kuhn, E.A., Corzett, M., Chromy, B.A., Segelke, B.W., Coleman, M.A., Bench, G., Hoeprich, P.D. & Sulchek, T.A. Quantifying size distributions of nanolipoprotein particles with single-particle analysis and molecular dynamic simulations. Journal of Lipid Research 49, 1420-1430 (2008).
  10. Boutet, S., Bogan, M.J., Barty, A., Frank, M., Benner, W.H., Marchesini, S., Seibert, M.M., Hajdu, J. & Chapman, H.N. Ultrafast soft X-ray scattering and reference-enhanced diffractive imaging of weakly scattering nanoparticles. Journal of Electron Spectroscopy and Related Phenomena 166, 65-73 (2008).
  11. Bowles, T.L., Kim, R., Galante, J., Parsons, C.M., Virudachalam, S., Kung, H.J. & Bold, R.J. Pancreatic cancer cell lines deficient in argininosuccinate synthetase are sensitive to arginine deprivation by arginine deiminase. International Journal of Cancer 123, 1950-1955 (2008).
  12. Brock, T.K., Gentile, N.L., Louie, R.F., Tran, N.K., Kitano, T. & Kost, G.J. Assessing Thrombin Generation at the Point of Care. Clinical Chemistry 55, 398-399 (2009).
  13. Cappuccio, J.A., Blanchette, C.D., Sulchek, T.A., Arroyo, E.S., Kralj, J.M., Hinz, A.K., Kuhn, E.A., Chromy, B.A., Segelke, B.W., Rothschild, K.J., Fletcher, J.E., Katzen, F., Peterson, T.C., Kudlicki, W.A., Bench, G., Hoeprich, P.D. & Coleman, M.A. Cell-free Co-expression of Functional Membrane Proteins and Apolipoprotein, Forming Soluble Nanolipoprotein Particles. Molecular & Cellular Proteomics 7, 2246-2253 (2008).
  14. Chan, J., Fore, S., Wachsman-Hogiu, S. & Huser, T. Raman spectroscopy and microscopy of individual cells and cellular components. Laser & Photonics Reviews 2, 325-349 (2008).
  15. Chan, J.W., Lieu, D.K., Huser, T. & Li, R.A. Non-invasive, label-free spectroscopic separation of human embryonic stem cells (hESCs) and their cardiac derivatives. Cell Research 18 (2008).
  16. Chan, J.W., Lieu, D.K., Huser, T. & Li, R.A. Label-Free Separation of Human Embryonic Stem Cells and Their Cardiac Derivatives Using Raman Spectroscopy. Analytical Chemistry 81, 1324-1331 (2009).
  17. Chan, J.W., Taylor, D.S. & Thompson, D.L. The Effect of Cell Fixation on the Discrimination of Normal and Leukemia Cells with Laser Tweezers Raman Spectroscopy. Biopolymers 91, 132-139 (2009).
  18. Chang, H.H., Falick, A.M., Carlton, P.M., Sedat, J.W., DeRisi, J.L. & Marletta, M.A. N-terminal processing of proteins exported by malaria parasites. Molecular and Biochemical Parasitology 160, 107-115 (2008).
  19. Chang, Y.M., Bai, L., Liu, S., Yang, J.C., Kung, H.J. & Evans, C.P. Src family kinase oncogenic potential and pathways in prostate cancer as revealed by AZD0530. Oncogene 27, 6365-6375 (2008).
  20. Cho, H., Baker, B.R., Wachsmann-Hogiu, S., Pagba, C.V., Laurence, T.A., Lane, S.M., Lee, L.P. & Tok, J.B.H. Aptamer-Based SERRS Sensor for Thrombin Detection. Nano Letters 8, 4386-4390 (2008).
  21. Choi, D., Kang, T., Cho, H., Choi, Y. & Lee, L.P. Additional amplifications of SERS via an optofluidic CD-based platform. Lab on a Chip 9, 239-243 (2009).
  22. Choi, S.S., Zawadzki, R.J., Greiner, M.A., Werner, J.S. & Keltner, J.L. Fourier-domain optical coherence tomography and adaptive optics reveal nerve fiber layer loss and photoreceptor changes in a patient with optic nerve drusen. Journal of Neuro-Ophthalmology 28, 120-125 (2008).
  23. Coldwell, K.E., Cutts, S.M., Ognibene, T.J., Henderson, P.T. & Phillips, D.R. Detection of Adriamycin-DNA adducts by accelerator mass spectrometry at clinically relevant Adriamycin concentrations. Nucleic Acids Research 36 (2008).
  24. Cosman, M., Pesavento, J.B., Zemla, A., Beernink, P.T., Balhorn, R. & Barsky, D. Identification of a thermo-regulated glutamine-binding protein from Yersinia pestis. Protein and Peptide Letters 15, 887-894 (2008).
  25. Cox, C.D., West, E.J., Liu, M.C., Wang, K.K.W., Hayes, R.L. & Lyeth, B.G. Dicyclomine, an M1 Muscarinic Antagonist, Reduces Biomarker Levels, But Not Neuronal Degeneration, in Fluid Percussion Brain Injury. Journal of Neurotrauma 25, 1355-1365 (2008).
  26. Cui, Y.L., Caudel, D.D., Bhattacharya, P., Burger, A., Mandal, K.C., Johnstone, D. & Payne, S.A. Deep levels in GaTe and GaTe:In crystals investigated by deep-level transient spectroscopy and photoluminescence. Journal of Applied Physics 105 (2009).
  27. Cui, Y.L., Roy, U.N., Burger, A. & Goldstein, J.T. Photoluminescence study of AgGaSe2, AgGa0.9In0.1Se2, and AgGa0.8In0.2Se2 crystals grown by the horizontal Bridgman technique. Journal of Applied Physics 103 (2008).
  28. Dasgupta, J., Frontiera, R.R., Taylor, K.C., Lagarias, J.C. & Mathies, R.A. Ultrafast excited-state isomerization in phytochrome revealed by femtosecond stimulated Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America 106, 1784-1789 (2009).
  29. de Leoz, M.L.A., An, H.J., Kronewitter, S., Kim, J., Beecroft, S., Vinall, R., Miyamoto, S., White, R.D., Lam, K.S. & Lebrilla, C. Glycomic approach for potential biomarkers on prostate cancer: Profiling of N-linked glycans in human sera and pRNS cell lines. Disease Markers 25, 243-258 (2008).
  30. Demos, S.G. & Sharareh, S. Real time assessment of RF cardiac tissue ablation with optical spectroscopy. Optics Express 16, 15286-15296 (2008).
  31. DeNardo, G.L., DeNardo, S.J. & Balhorn, R. Systemic radiotherapy can cure lymphoma: A paradigm for other malignancies? Cancer Biotherapy and Radiopharmaceuticals 23, 383-397 (2008).
  32. DeNardo, G.L., Mirick, G.R., Hok, S., DeNardo, S.J., Beckett, L.A., Adamson, G.N. & Balhorn, R.L. Molecular specific and cell selective cytotoxicity induced by a novel synthetic HLA-DR antibody mimic for lymphoma and leukemia. International Journal of Oncology 34, 511-516 (2009).
  33. DeNardo, G.L., Natarajan, A., Hok, S., Mirick, G., DeNardo, S.J., Corzett, M., Sysko, V., Lehmann, J., Beckett, L. & Balhorn, R. Nanomolecular HLA-DR10 Antibody Mimics: A Potent System for Molecular Targeted Therapy and Imaging. Cancer Biotherapy and Radiopharmaceuticals 23, 783-795 (2008).
  34. DePonte, D.P., Weierstall, U., Schmidt, K., Warner, J., Starodub, D., Spence, J.C.H. & Doak, R.B. Gas dynamic virtual nozzle for generation of microscopic droplet streams. Journal of Physics D-Applied Physics 41 (2008).
  35. Di Giorgio, A.M., Hou, Y.J., Zhao, X.R., Zhang, B., Lyeth, B.G. & Russell, M.J. Dimethyl sulfoxide provides neuroprotection in a traumatic brain injury model. Restorative Neurology and Neuroscience 26, 501-507 (2008).
  36. Elliott, S.L., Choi, S.S., Doble, N., Hardy, J.L., Evans, J.W. & Werner, J.S. Role of high-order aberrations in senescent changes in spatial vision. Journal of Vision 9 (2009).
  37. Feller, L., Bearinger, J.P., Wu, L., Hubbell, J.A., Textor, M. & Tosatti, S. Micropatterning of gold substrates based on poly(propylene sulfide-bl-ethylene glycol), (PPS-PEG) background passivation and the molecular-assembly patterning by lift-off (MAPL) technique. Surface Science 602, 2305-2310 (2008).
  38. Fischer, N.O., Blanchette, C.D., Chromy, B.A., Kuhn, E.A., Segelke, B.W., Corzett, M., Bench, G., Mason, P.W. & Hoeprich, P.D. Immobilization of His-Tagged Proteins on Nickel-Chelating Nanolipoprotein Particles. Bioconjugate Chemistry 20, 460-465 (2009).
  39. Flusberg, B.A., Nimmerjahn, A., Cocker, E.D., Mukamel, E.A., Barretto, R.P.J., Ko, T.H., Burns, L.D., Jung, J.C. & Schnitzer, M.J. High-speed, miniaturized fluorescence microscopy in freely moving mice. Nature Methods 5, 935-938 (2008).
  40. Fu, L., Stickel, J.R., Badawi, R.D. & Qi, J.Y. Quantitative Accuracy of Penalized-Likelihood Reconstruction for ROI Activity Estimation. Ieee Transactions on Nuclear Science 56, 167-172 (2009).
  41. Galante, J.M., Mortenson, M.M., Bowles, T.L., Virudachalam, S. & Bold, R.J. ERK/BCL-2 Pathway in the Resistance of Pancreatic Cancer to Anoikis. Journal of Surgical Research 152, 18-25 (2009).
  42. Gerth, C., Zawadzki, R.J., Licht, C., Werner, J.S. & Heon, E. A microstructural retinal analysis of membrano-proliferative glomerulonephritis type II. British Journal of Ophthalmology 92, 1150-1151 (2008).
  43. Gerth, C., Zawadzki, R.J., Werner, J.S. & Henon, E. Retinal microstructure in patients with EFEMP1 retinal dystrophy evaluated by Fourier domain OCT. Eye 23, 480-483 (2009).
  44. Gerth, C., Zawadzki, R.J., Werner, J.S. & Heon, E. Retinal morphological changes of patients with X-linked retinoschisis evaluated by Fourier-domain optical coherence tomography. Archives of Ophthalmology 126, 807-811 (2008).
  45. Gustafsson, M.G.L., Shao, L., Carlton, P.M., Wang, C.J.R., Golubovskaya, I.N., Cande, W.Z., Agard, D.A. & Sedat, J.W. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophysical Journal 94, 4957-4970 (2008).
  46. Henderson, P.T., Li, T., Zhang, H., Malfatti, M., Ma, X., Turteltaub, K.W., White, R.W.D. & Pan, C.X. Towards personalized chemotherapeutics: Exploring variations in DNA damage/repair in cells and tumors treated with carboplatin using accelerator mass spectrometry. Environmental and Molecular Mutagenesis 49, 552-552 (2008).
  47. Higgins, L.J. & Rutledge, J.C. Inflammation associated with the postprandial lipolysis of triglyceriderich lipoproteins by lipoprotein lipase. Current Atherosclerosis Reports 11, 199-205 (2009).
  48. Howells, M.R., Beetz, T., Chapman, H.N., Cui, C., Holton, J.M., Jacobsen, C.J., Kirz, J., Lima, E., Marchesini, S., Miao, H., Sayre, D., Shapiro, D.A., Spence, J.C.H. & Starodub, D. An assessment of the resolution limitation due to radiation-damage in X-ray diffraction microscopy. Journal of Electron Spectroscopy and Related Phenomena 170, 4-12 (2009).
  49. Hoy, C.L., Durr, N.J., Chen, P.Y., Piyawattanametha, W., Ra, H., Solgaard, O. & Ben-Yakar, A. Miniaturized probe for femtosecond laser microsurgery and two-photon imaging. Optics Express 16, 9996-10005 (2008).
  50. Hu, W., Su, Y.S. & Lagarias, J.C. A Light-Independent Allele of Phytochrome B Faithfully Recapitulates Photomorphogenic Transcriptional Networks. Molecular Plant 2, 166-182 (2009).
  51. Hubner, W., McNerney, G.P., Chen, P., Dale, B.M., Gordon, R.E., Chuang, F.Y.S., Li, X.D., Asmuth, D.M., Huser, T. & Chen, B.K. Quantitative 3D Video Microscopy of HIV Transfer Across T Cell Virological Synapses. Science 323, 1743-1747 (2009).
  52. Huser, T. Nano-Biophotonics: new tools for chemical nano-analytics. Current Opinion in Chemical Biology 12, 497-504 (2008).
  53. Iyer, G., Michalet, X., Chang, Y.P., Pinaud, F.F., Matyas, S.E., Payne, G. & Weiss, S. High Affinity scFv-Hapten Pair as a Tool for Quantum Dot Labeling and Tracking of Single Proteins in Live Cells. Nano Letters 8, 4618-4623 (2008).
  54. Kassu, A., Taguenang, J.M. & Sharma, A. Photochemically deposited surface relief gratings of an azo-dye-labeled phospholipid from the aqueous phase. Optics Letters 33, 1656-1658 (2008).
  55. Katzen, F., Fletcher, J.E., Yang, J.P., Kang, D., Peterson, T.C., Cappuccio, J.A., Blanchette, C.D., Sulchek, T., Chromy, B.A., Hoeprich, P.D., Coleman, M.A. & Kudlicki, W. Insertion of membrane proteins into discoidal membranes using a cell-free protein expression approach. Journal of Proteome Research 7, 3535-3542 (2008).
  56. Kim, R.H., Coates, J.M., Bowles, T.L., McNerney, G.P., Sutcliffe, J., Jung, J.U., Gandour-Edwards, R., Chuang, F.Y.S., Bold, R.J. & Kung, H.J. Arginine Deiminase as a Novel Therapy for Prostate Cancer Induces Autophagy and Caspase-Independent Apoptosis. Cancer Research 69, 700-708 (2009).
  57. Kost, G.J., Tran, N.K., Louie, R.F., Gentile, N.L. & Abad, V.J. Assessing the Performance of Handheld Glucose Testing for Critical Care. Diabetes Technology & Therapeutics 10, 445-451 (2008).
  58. Lau, A.Y., Lee, L.P. & Chan, J.W. An integrated optofluidic platform for Raman-activated cell sorting. Lab on a Chip 8, 1116-1120 (2008).
  59. Laurence, T.A., Braun, G., Talley, C., Schwartzberg, A., Moskovits, M., Reich, N. & Huser, T. Rapid, Solution-Based Characterization of Optimized SERS Nanoparticle Substrates. Journal of the American Chemical Society 131, 162-169 (2009).
  60. Laurence, T.A., Bude, J.D., Shen, N., Feldman, T., Miller, P.E., Steele, W.A. & Suratwala, T. Metallic-like photoluminescence and absorption in fused silica surface flaws. Applied Physics Letters 94 (2009).
  61. Laurence, T.A., Kwon, Y., Johnson, A., Hollars, C.W., O'Donnell, M., Camarero, J.A. & Barsky, D. Motion of a DNA sliding clamp observed by single molecule fluorescence spectroscopy. Journal of Biological Chemistry 283, 22895-22906 (2008).
  62. Llewellyn, M.E., Barretto, R.P.J., Delp, S.L. & Schnitzer, M.J. Minimally invasive high-speed imaging of sarcomere contractile dynamics in mice and humans. Nature 454, 784-788 (2008).
  63. Luo, J.T., Zhang, H.Y., Xiao, W.W., Kumaresan, P.R., Shi, C.Y., Pan, C.X., Aina, O.H. & Lam, K.S. Rainbow beads: A color coding method to facilitate high-throughput screening and optimization of one-bead one-compound combinatorial libraries. Journal of Combinatorial Chemistry 10, 599-604 (2008).
  64. Marchesini, S., Boutet, S., Sakdinawat, A.E., Bogan, M.J., Bajt, S., Barty, A., Chapman, H.N., Frank, M., Hau-Riege, S.P., Szoke, A., Cui, C.W., Shapiro, D.A., Howells, M.R., Spence, J.C.H., Shaevitz, J.W., Lee, J.Y., Hajdu, J. & Seibert, M.M. Massively parallel X-ray holography. Nature Photonics 2, 560-563 (2008).
  65. Martinez, A., Hinz, J.M., Gomez, L., Molina, B., Acuna, H., Jones, I.M., Frias, S. & Coleman, M.A. Differential expression of TP53 associated genes in Fanconi anemia cells after mitomycin C and hydroxyurea treatment. Mutation Research-Genetic Toxicology and Environmental Mutagenesis 656, 1-7 (2008).
  66. Miller, A., Hollars, C.W., Lane, S.M. & Laurence, T.A. Fluorescence Cross-Correlation Spectroscopy as a Universal Method for Protein Detection with low False Positives. Analytical Chemistry (2009).
  67. Myers, F.B. & Lee, L.P. Innovations in optical microfluidic technologies for point-of-care diagnostics. Lab on a Chip 8, 2015-2031 (2008).
  68. Narayan, S., Lehmann, J., Coleman, M.A., Vaughan, A., Yang, C.C., Enepekides, D., Farwell, G., Purdy, J.A., Laredo, G., Nolan, K., Pearson, F.S. & Vijayakumar, S. Prospective evaluation to establish a dose response for clinical oral mucositis in patients undergoing head-and-neck conformal radiotherapy. International Journal of Radiation Oncology Biology Physics 72, 756-762 (2008).
  69. Oliver, A.E., Kendall, E.L., Howland, M.C., Sanii, B., Shreve, A.P. & Parikh, A.N. Protecting, patterning, and scaffolding supported lipid membranes using carbohydrate glasses. Lab on a Chip 8, 892-897 (2008).
  70. Park, S.H., Wang, X.B., Liu, R.W., Lam, K.S. & Weiss, R.H. High throughput screening of a small molecule one-bead-one-compound combinatorial library to identify attenuators of p21 as chemotherapy sensitizers. Cancer Biology & Therapy 7, 2015-2022 (2008).
  71. Parsons, C.M., Sutcliffe, J.L. & Bold, R.J. Preoperative evaluation of pancreatic adenocarcinoma. Journal of Hepato-Biliary-Pancreatic Surgery 15, 429-435 (2008).
  72. Purnell, P.R., Mack, P.C., Tepper, C.G., Evans, C.P., Green, T.P., Gumerlock, P.H., Lara, P.N., Gandara, D.R., Kung, H.J. & Gautschi, O. The Src Inhibitor AZD0530 Blocks Invasion and May Act as a Radiosensitizer in Lung Cancer Cells. Journal of Thoracic Oncology 4, 448-454 (2009).
  73. Qu, Y., Masiel, D.J., Cheng, N.N., Sutherland, A.M., Carter, J.D., Browning, N.D. & Guo, T. Recognition of melting of nanoparticle catalysts with cubically shaped Co3O4 nanoparticles. Journal of Colloid and Interface Science 321, 251-255 (2008).
  74. Qu, Y.Q., Sutherland, A.M. & Guo, T. Carbon dioxide reforming of methane by Ni/Co nanoparticle catalysts immobilized on single-walled carbon nanotubes. Energy & Fuels 22, 2183-2187 (2008).
  75. Raman, R.N., Pivetti, C.D., Matthews, D.L., Troppmann, C. & Demos, S.G. A non-contact method and instrumentation to monitor renal ischemia and reperfusion with optical spectroscopy. Optics Express 17, 894-905 (2009).
  76. Rativa, D., Gomes, A.S.L., Wachsmann-Hogiu, S., Farkas, D.L. & de Araujo, R.E. Nonlinear Excitation of Tryptophan Emission Enhanced by Silver Nanoparticles. Journal of Fluorescence 18, 1151-1155 (2008).
  77. Ray, S., Hagge, R., Gillen, M., Cerejo, M., Shakeri, S., Beckett, L., Greasby, T. & Badawi, R.D. Comparison of two-dimensional and three-dimensional iterative watershed segmentation methods in hepatic tumor volumetrics. Medical Physics 35, 5869-5881 (2008).
  78. Rockwell, N.C., Njuguna, S.L., Roberts, L., Castillo, E., Parson, V.L., Dwojak, S., Lagarias, J.C. & Spiller, S.C. A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus. Biochemistry 47, 7304-7316 (2008).
  79. Rockwell, N.C., Shang, L., Martin, S.S. & Lagarias, J.C. Distinct classes of red/far-red photochemistry within the phytochrome superfamily. Proceedings of the National Academy of Sciences of the United States of America 106, 6123-6127 (2009).
  80. Ross, B.M. & Lee, L.P. Comparison of near- and far-field measures for plasmon resonance of metallic nanoparticles. Optics Letters 34, 896-898 (2009).
  81. Saxena, V., Marcu, L. & Karunasiri, G. A novel noninvasive all optical technique to monitor physiology of an exercising muscle. Physics in Medicine and Biology 53, 6211-6225 (2008).
  82. Schermelleh, L., Carlton, P.M., Haase, S., Shao, L., Winoto, L., Kner, P., Burke, B., Cardoso, M.C., Agard, D.A., Gustafsson, M.G.L., Leonhardt, H. & Sedat, J.W. Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy. Science 320, 1332-1336 (2008).
  83. Schipper, M.L., Iyer, G., Koh, A.L., Cheng, Z., Ebenstein, Y., Aharoni, A., Keren, S., Bentolila, L.A., Li, J.Q., Rao, J.H., Chen, X.Y., Banin, U., Wu, A.M., Sinclair, R., Weiss, S. & Gambhir, S.S. Particle Size, Surface Coating, and PEGylation Influence the Biodistribution of Quantum Dots in Living Mice. Small 5, 126-134 (2009).
  84. Schmidt, K.E., Spence, J.C.H., Weierstall, U., Kirian, R., Wang, X., Starodub, D., Chapman, H.N., Howells, M.R. & Doak, R.B. Tomographic femtosecond x-ray diffractive imaging. Physical Review Letters 101 (2008).
  85. Schnitzer, M. Of mice, men, and microscopes: Watching the brain dynamics of motor control at the cellular scale in behaving subjects. Neuroscience Research 61, S3-S3 (2008).
  86. Shao, L., Isaac, B., Uzawa, S., Agard, D.A., Sedat, J.W. & Gustafsson, M.G.L. (IS)-S-5: Wide-field light microscopy with 100-nm-scale resolution in three dimensions. Biophysical Journal 94, 4971-4983 (2008).
  87. Shapiro, D.A., Chapman, H.N., DePonte, D., Doak, R.B., Fromme, P., Hembree, G., Hunter, M., Marchesini, S., Schmidt, K., Spence, J., Starodub, D. & Weierstall, U. Powder diffraction from a continuous microjet of submicrometer protein crystals. Journal of Synchrotron Radiation 15, 593-599 (2008).
  88. Shreve, A.P., Howland, M.C., Sapuri-Butti, A.R., Allen, T.W. & Parikh, A.N. Evidence for Leaflet-Dependent Redistribution of Charged Molecules in Fluid Supported Phospholipid Bilayers. Langmuir 24, 13250-13253 (2008).
  89. Sonn, G.A., Mach, K.E., Jensen, K., Hsiung, P.L., Jones, S.N., Contag, C.H., Wang, T.D. & Liao, J.C. Fibered Confocal Microscopy of Bladder Tumors: An ex Vivo Study. Journal of Endourology 23, 197-201 (2009).
  90. Spence, J.C.H. & Hawkes, P.W. Diffract-and-destroy: Can X-ray lasers "solve" the radiation damage problem? Ultramicroscopy 108, 1502-1503 (2008).
  91. Stoll, S., Gunn, A., Brynda, M., Sughrue, W., Kohler, A.C., Ozarowski, A., Fisher, A.J., Lagarias, J.C. & Britt, R.D. Structure of the Biliverdin Radical Intermediate in Phycocyanobilin:Ferredoxin Oxidoreductase Identified by High-Field EPR and DFT. Journal of the American Chemical Society 131, 1986-1995 (2009).
  92. Szmodis, A.W., Blanchette, C.D., Levchenko, A.A., Navrotsky, A., Longo, M.L., Orme, C.A. & Parikh, A.N. Direct visualization of phase transition dynamics in binary supported phospholipid bilayers using imaging ellipsometry. Soft Matter 4, 1161-1164 (2008).
  93. Taguenang, J.M., Kassu, A., Ruffin, P.B., Brantley, C., Edwards, E. & Sharma, A. Reversible UV degradation of PMMA plastic optical fibers. Optics Communications 281, 2089-2092 (2008).
  94. Talavera, D., Dafoe, D.C., Ng, T., Wachsmann-Hogiu, S., Castillo-Henkel, C. & Farkas, D.L. Enhancement of Embryonic Stem Cell Differentiation Promoted by Avian Chorioallantoic Membranes. Tissue Eng Part A (2009).
  95. Thompson, D.L., Pearson, F., Thomas, C., Rao, R., Matthews, D., Albala, J.S., Wachsmann-Hogiu, S. & Coleman, M.A. An Adaptable, Portable Microarray Reader for Biodetection. Sensors 9, 2524-2537 (2009).
  96. Thorne, S.H., Barak, Y., Liang, W.C., Bachmann, M.H., Rao, J.H., Contag, C.H. & Matin, A. CNOB/ChrR6, a new prodrug enzyme cancer chemotherapy. Molecular Cancer Therapeutics 8, 333-341 (2009).
  97. Wachsmann-Hogiu, S., Weeks, T. & Huser, T. Chemical analysis in vivo and in vitro by Raman spectroscopy--from single cells to humans. Curr Opin Biotechnol 20, 63-73 (2009).
  98. Wang, L.M., Sapuri-Butti, A.R., Aung, H.H., Parikh, A.N. & Rutledge, J.C. Triglyceride-rich lipoprotein lipolysis increases aggregation of endothelial cell membrane microdomains and produces reactive oxygen species. American Journal of Physiology-Heart and Circulatory Physiology 295, H237-H244 (2008).
  99. Wang, Y., Mikhailova, M., Bose, S., Pan, C.X., White, R.D. & Ghosh, P.M. Regulation of androgen receptor transcriptional activity by rapamycin in prostate cancer cell proliferation and survival. Oncogene 27, 7106-7117 (2008).
  100. Watkins, G.A., Jones, E.F., Shell, M.S., VanBrocklin, H.F., Pan, M.H., Hanrahan, S.M., Feng, J.J., He, J., Sounni, N.E., Dill, K.A., Contag, C.H., Coussens, L.M. & Franc, B.L. Development of an optimized activatable MMP-14 targeted SPECT imaging probe. Bioorganic & Medicinal Chemistry 17, 653-659 (2009).
  101. Wetmore, D.Z., Mukamel, E.A. & Schnitzer, M.J. Lock-and-key mechanisms of cerebellar memory recall based on rebound currents. Journal of Neurophysiology 100, 2328-2347 (2008).
  102. Yao, N.H., Xiao, W.W., Wang, X.B., Marik, J., Park, S.H., Takada, Y. & Lam, K.S. Discovery of Targeting Ligands for Breast Cancer Cells Using the One-Bead One-Compound Combinatorial Method. Journal of Medicinal Chemistry 52, 126-133 (2009).
  103. Zawadzki, R.J., Cense, B., Jones, S.M., Olivier, S.S., Miller, D.T. & Werner, J.S. Ultra-high-resolution optical coherence tomography gets adaptive-optic 'glasses'. Laser Focus World 44, 55-+ (2008).
  104. Zawadzki, R.J., Choi, S.S., Fuller, A.R., Evans, J.W., Hamann, B. & Werner, J.S. Cellular resolution volumetric in vivo retinal imaging with adaptive optics-optical coherence tomography. Optics Express 17, 4084-4094 (2009).
  105. Zhang, B., West, E.J., Van, K.C., Gurkoff, G.G., Zhou, J., Zhang, X.M., Kozikowski, A.P. & Lyeth, B.G. HDAC inhibitor increases histone H3 acetylation and reduces microglia inflammatory response following traumatic brain injury in rats. Brain Research 1226, 181-191 (2008).

 

2007-2008

          Chan, J.W., Taylor, D.S., Lane, S.M., Zwerdling, T., Tuscano, J. & Huser, T. Nondestructive identification of individual leukemia cells by laser trapping Raman spectroscopy. Anal. Chem. 80, 2180-2187 (2008).

            Kim, B.S., Lee, C.C.I., Christensen, J.E., Huser, T.R., Chan, J.W. & Tarantal, A.F. Growth, differentiation, and biochemical signatures of rhesus monkey mesenchymal stem cells. Stem Cells and Development 17, 185-198 (2008).

Bogan, M.J., Benner, W.H., Boutet, S., Rohner, U., Frank, M., Barty, A., Seibert, M.M., Maia, F., Marchesini, S., Bajt, S., Woods, B., Riot, V., Hau-Riege, S.P., Svenda, M., Marklund, E., Spiller, E., Hajdu, J. & Chapman, H.N. Single particle X-ray diffractive imaging. Nano Letters 8, 310-316 (2008).

            Starodub, D., Rez, P., Hembree, G., Howells, M., Shapiro, D., Chapman, H.N., Fromme, P., Schmidt, K., Weierstall, U., Doak, R.B. & Spence, J.C.H. Dose, exposure time and resolution in serial X-ray crystallography. Journal of Synchrotron Radiation 15, 62-73 (2008).

Wang, C.Y., Miyazaki, N., Yamashita, T., Higashiura, A., Nakagawa, A., Li, T.C., Takeda, N., Xing, L., Hjalmarsson, E., Friberg, C., Liou, D.M., Sung, Y.J., Tsukihara, T., Matsuura, Y., Miyamura, T. & Cheng, R.H. Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle. Acta Crystallogr. F-Struct. Biol. Cryst. Commun. 64, 318-322 (2008).

            Srivastava, I.K., Kan, E., Sun, Y., Sharma, V.A., Cisto, J., Burke, B., Lian, Y., Hilt, S., Biron, Z., Hartog, K., Stamatatos, L., Cheng, R.H., Ulmer, J.B. & Barnett, S.W. Comparative evaluation of trimeric envelope glycoproteins derived from subtype C and BHIV-1 R5 isolates. Virology 372, 273-290 (2008).

Hsiung, P.L., Hardy, J., Friedland, S., Soetikno, R., Du, C.B., Wu, A.P., Sahbaie, P., Crawford, J.M., Lowe, A.W., Contag, C.H. & Wang, T.D. Detection of colonic dysplasia in vivo using a targeted heptapeptide and confocal microendoscopy. Nat. Med. 14, 454-458 (2008).

            Schie, I.W., Weeks, T., McNerney, G.P., Fore, S., Sampson, J.K., Wachsmann-Hogiu, S., Rutledge, J.C. & Huser, T. Simultaneous forward and epi-CARS microscopy with a single detector by time-correlated single photon counting. Opt. Express 16, 2168-2175 (2008).

Sanii, B., Smith, A.M., Butti, R., Brozell, A.M. & Parikh, A.N. Bending membranes on demand: Fluid phospholipid bilayers on topographically deformable substrates. Nano Letters 8, 866-871 (2008).

            Gerth, C., Zawadzki, R.J., Werner, J.S. & Heon, E. Retinal morphology in patients with BBS1 and BBS10 related Bardet-Biedl Syndrome evaluated by Fourier-domain optical coherence tomography. Vision Res. 48, 392-399 (2008).

            Fei, Y.Y., Landry, J.P., Sun, Y.S., Zhu, X.D., Luo, J.T., Wang, X.B. & Lam, K.S. A novel high-throughput scanning microscope for label-free detection of protein and small-molecule chemical microarrays. Rev. Sci. Instrum. 79 (2008).

            Taguenang, J.M., Kassu, A., Ruffin, P.B., Brantley, C., Edwards, E. & Sharma, A. Reversible UV degradation of PMMA plastic optical fibers. Opt. Commun. 281, 2089-2092 (2008).

            Sun, Y.H., Liu, R., Elson, D.S., Hollars, C.W., Jo, J.A., Park, J., Sun, Y. & Marcu, L. Simultaneous time- and wavelength-resolved fluorescence spectroscopy for near real-time tissue diagnosis. Opt. Lett. 33, 630-632 (2008).

            Gustafsson, M.G., Shao, L., Carlton, P.M., Wang, C.J., Golubovskaya, I.N., Cande, W.Z., Agard, D.A. & Sedat, J.W. in Biophysical Journal (2008).

            Weierstall, U., Doak, R.B., Spence, J.C.H., Starodub, D., Shapiro, D., Kennedy, P., Warner, J., Hembree, G.G., Fromme, P. & Chapman, H.N. Droplet streams for serial crystallography of proteins. Exp. Fluids 44, 675-689 (2008).

            Cho, S.B., Liu, C., Gustafsson, M. & Kim, D.Y. Vector wave analysis for nonnormal incident rays in epimicroscopic refractive index profile measurements. Appl. Optics 47, 157-163 (2008).

Pircher, M., Zawadzki, R.J., Evans, J.W., Werner, J.S. & Hitzenberger, C.K. Simultaneous imaging of human cone mosaic with adaptive optics enhanced scanning laser ophthalmoscopy and high-speed transversal scanning optical coherence tomography. Opt. Lett. 33, 22-24 (2008).

 

2006-2007

            Chan, J.W., Winhold, H., Corzett, M.H., Ulloa, J.M., Cosman, M., Balhorn, R. & Huser, T. Monitoring dynamic protein expression in living E-coli. Bacterial Celts by laser tweezers raman spectroscopy. Cytometry Part A 71A, 468-474 (2007).

            Bogan, M.J., Benner, W.H., Hau-Riege, S.P., Chapman, H.N. & Frank, M. Aerosol sample preparation methods for X-ray diffractive imaging: Size-selected spherical nanoparticles on silicon nitride foils. Journal of Aerosol Science 38, 1119-1128 (2007).

            Chapman, H.N., Hau-Riege, S.P., Bogan, M.J., Bajt, S., Barty, A., Boutet, S., Marchesini, S., Frank, M., Woods, B.W., Benner, W.H., London, R.A., Rohner, U., Szoke, A., Spiller, E., Moller, T., Bostedt, C., Shapiro, D.A., Kuhlmann, M., Treusch, R., Plonjes, E., Burmeister, F., Bergh, M., Caleman, C., Huldt, G., Seibert, M.M. & Hajdu, J. Femtosecond time-delay X-ray holography. Nature 448, 676-679 (2007).

            Gaffney, K.J. & Chapman, H.N. Imaging atomic structure and dynamics with ultrafast X-ray scattering. Science 316, 1444-1448 (2007).

            Coleman, M.A. Model systems and current approaches in biodosimetry. Environ. Mol. Mutagen. 48, 542-542 (2007).

            Vogel, A., Chernomordik, V.V., Riley, J.D., Hassan, M., Amyot, F., Dasgeb, B., Demos, S.G., Pursley, R., Little, R.F., Yarchoan, R., Tao, Y. & Gandjbakhche, A.H. Using noninvasive multispectral imaging to quantitatively assess tissue vasculature. J. Biomed. Opt. 12 (2007).

Carter, J.D., Cheng, N.N., Qu, Y.Q., Suarez, G.D. & Guo, T. Nanoscale energy deposition by x-ray absorbing nanostructures. J. Phys. Chem. B 111, 11622-11625 (2007).

            Ly, S., McNerney, G., Fore, S., Chan, J. & Huser, T. Time-gated single photon counting enables separation of CARS microscopy data from multiphoton-excited tissue autofluorescence. Opt. Express 15, 16839-16851 (2007).

            Lleo, A., Naiyanetr, P., Kenny, T.P., Selmi, C., Van de Water, J., Invernizzi, P., Zuin, M., Huser, T., Podda, M. & Gershwin, M.E. Intercellular transport and transilocation of IgA AMA in primary biliary cirrhosis. Hepatology 46, 549A-550A (2007).

Fore, S., Laurence, T.A., Hollars, C.W. & Huser, T. Counting constituents in molecular complexes by fluorescence photon antibunching. IEEE J. Sel. Top. Quantum Electron. 13, 996-1005 (2007).

            Su, Y.S. & Lagarias, J.C. Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell 19, 2124-2139 (2007).

            Rockwell, N.C. & Lagarias, J.C. Flexible mapping of homology onto structure with homolmapper. BMC Bioinformatics 8, 1-13 (2007).

            Tu, S.L., Rockwell, N.C., Lagarias, J.C. & Fisher, A.J. Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements. Biochemistry 46, 1484-1494 (2007).

Brozell, A.M., Muha, M.A., Abed-Amoli, A., Bricarello, D. & Parikh, A.N. Patterned when wet: Environment-dependent multifunctional patterns within amphiphilic colloidal crystals. Nano Letters 7, 3822-3826 (2007).

            Sanii, B. & Parikh, A.N. Surface-energy dependent spreading of lipid monolayers and bilayers. Soft Matter 3, 974-977 (2007).

            Yang, T.H., Yee, C.K., Amweg, M.L., Singh, S., Kendall, E.L., Dattelbaum, A.M., Shreve, A.P., Brinker, C.J. & Parikh, A.N. Optical detection of ion-channel-induced proton transport in supported phospholipid bilayers. Nano Letters 7, 2446-2451 (2007).

            Eiselein, L., Wilson, D.W., Lame, M.W. & Rutledge, J.C. Lipolysis products from triglyceride-rich lipoproteins increase endothelial permeability, perturb zonula occludens-1 and F-actin, and induce apoptosis. Am. J. Physiol.-Heart Circul. Physiol. 292, H2745-H2753 (2007).

            Aung, H.H., Gohil, K., Kota, R.S. & Rutledge, J.C. Genome-wide response of human aortic endothelial cell to triglyceride-rich lipoprotein lypolysis products. Arterioscler. Thromb. Vasc. Biol. 27, E59-E59 (2007).

            Higgins, L.J., Wang, L.M., Ting, H.J., Simon, S.I. & Rutledge, J.C. VLDL lipolysis products increase monocyte adhesion to endothelial cells by upregulation of CD11b and CD49d integrins. Arterioscler. Thromb. Vasc. Biol. 27, E68-E68 (2007).

            Wang, L.M., Gill, R., Newman, J. & Rutledge, J.C. Triglyceride-rich lipoprotein lipolysis products induce endothelial cell inflammation that is mediated by oxidized lipids. Arterioscler. Thromb. Vasc. Biol. 27, E72-E72 (2007).

            Sardar, D.K., Dee, D.M., Nash, K.L., Yow, R.M., Gruber, J.B. & Debnath, R. Optical characterization and ligand-field splitting of Er3+(4f(11)) energy levels in a fluorine containing tellurite glass. Journal of Applied Physics 102 (2007).

            Miyawaki, A. & Schnitzer, M.J. New technologies for neuroscience. Curr. Opin. Neurobiol. 17, 565-566 (2007).

            Cocker, E.D., Flusberg, B.A., Piyawattanametha, W., Jung, J.C., Baretto, R.P.J., Ko, T.H., Ra, H., Lee, D., Solgaard, O. & Schnitzer, M.J. Portable forms of fiber-optic one- and two-photon fluorescence microendoseopy towards imaging in freely moving mice. Biophys. J., 154A-154A (2007).

            Ko, T.H., Jung, J.C., Barretto, R.P.J., Wang, T.J., Capps, G., Recht, L. & Schnitzer, M.J. Long-term cellular level imaging of deep brain areas using one- and two-photon fluorescence microendoscopy. Biophys. J., 155A-155A (2007).

            Spence, J. Imaging technology - Harmonic pictures in a flash. Nature 449, 553-554 (2007).

            Schipper, M.L., Cheng, Z., Lee, S.W., Bentolila, L.A., Iyer, G., Rao, J.H., Chen, X.Y., Wul, A.M., Weiss, S. & Gambhirl, S.S. MicroPET-based biodistribution of quantum dots in living mice. J. Nucl. Med. 48, 1511-1518 (2007).

            Tsay, J.M., Trzoss, M., Shi, L.X., Kong, X.X., Selke, M., Jung, M.E. & Weiss, S. Singlet oxygen production by peptide-coated quantum dot-photosensitizer conjugates. J. Am. Chem. Soc. 129, 6865-6871 (2007).

            Iyer, G., Pinaud, F., Tsay, J. & Weiss, S. Solubilization of quantum dots with a recombinant peptide from Escherichia coli. Small 3, 793-798 (2007).

            Fore, S., Yuen, Y., Hesselink, L. & Huser, T. Pulsed-interleaved excitation FRET measurements on single duplex DNA molecules inside C-shaped nanoapertures. Nano Letters 7, 1749-1756 (2007).

Kam, Z., Kner, P., Agard, D. & Sedat, J.W. Modelling the application of adaptive optics to wide-field microscope live imaging. J. Microsc.-Oxf. 226, 33-42 (2007).

            Ra, H., Piyawattanametha, W., Taguchi, Y., Lee, D., Mandella, M.J. & Solgaard, O. Two-dimensional MEMS scanner for dual-axes confocal microscopy. J. Microelectromech. Syst. 16, 969-976 (2007).

            Liu, J.T.C., Mandella, M.J., Ra, H., Wong, L.K., Solgaard, O., Kino, G.S., Piyawattanametha, W., Contag, C.H. & Wang, T.D. Miniature near-infrared dual-axes confocal microscope utilizing a two-dimensional microelectromechanical systems scanner. Opt. Lett. 32, 256-258 (2007).

            Larabi, M., Mackanos, M., Shinde, R., Contag, C. & Guccione, S. Temperature sensitive liposomes for local drug delivery using focused ultrasound. Mol. Cancer Ther. 6, 3561S-3561S (2007).

            Wender, P.A., Goun, E.A., Jones, L.R., Pillow, T.H., Rothbard, J.B., Shinde, R. & Contag, C.H. Real-time analysis of uptake and bioactivatable cleavage of luciferin-transporter conjugates in transgenic reporter mice. Proc. Natl. Acad. Sci. U. S. A. 104, 10340-10345 (2007).

            Balhorn, R. The protamine family of sperm nuclear proteins. Genome Biol. 8 (2007).

            DeNardo, G.L., Hok, S., Natarajan, A., Cosman, M., DeNardo, S.J., Lightstone, F.C., Mirick, G.R., Yuan, A., Perkins, J., Sysko, V.V., Lehmann, J. & Balhorn, R.L. Characteristics of dimeric (bis) bidentate selective high affinity ligands as HLA-DR10 beta antibody mimics targeting non-Hodgkin's lymphoma. Int. J. Oncol. 31, 729-740 (2007).

            Balhorn, R., Hok, S., Burke, P.A., Lightstone, F.C., Cosman, M., Zemla, A., Mirick, G., Perkins, J., Natarajan, A., Corzett, M., DeNardo, S., Albrecht, H., Gregg, J.P. & DeNardo, G.L. Selective high-affinity ligand antibody mimics for cancer diagnosis and therapy: Initial application to Lymphoma/Leukemia. Clin. Cancer Res. 13, 5621S-5628S (2007).

            Albrecht, H., Cosman, M., Ngu-Schwernlein, M., Corzett, M., Curran, K.W., Dolan, C., Fang, X.M., DeNardo, S.J., DeNardo, G.L. & Balhorn, R. Recombinant expression of the beta-subunit of HLA-DR10 for the selection of novel lymphoma targeting molecules. Cancer Biother. Radiopharm. 22, 531-542 (2007).

            DeNardo, G.L., Natarajan, A., Hok, S., Perkins, J., Cosman, M., DeNardo, S.J., Lightstone, F.C., Mirick, G.R., Miers, L.A. & Balhorn, R.L. Pharmacokinetic characterization in xenografted mice of a series of first-generation mimics for HLA-DR antibody, Lym-1, as carrier molecules to image and treat lymphoma. J. Nucl. Med. 48, 1338-1347 (2007).

            Baer, G.M., Iv, W.S., Wilson, T.S., Benett, W.J., Matthews, D.L., Hartman, J. & Maitland, D.J. Fabrication and in vitro deployment of a laser-activated shape memory polymer vascular stent. Biomed. Eng. Online 6 (2007).

            Li, P.P., Nguyen, A.P., Qu, Q.M., Jafri, Q.H., Aungsumart, S., Cheng, R.H. & Kasamatsu, H. Importance of calcium-binding site 2 in simian virus 40 infection. J. Virol. 81, 6099-6105 (2007).

            Wu, S.R., Haag, L., Hammar, L., Wu, B., Garoft, H., Xing, L., Murata, K. & Cheng, R.H. The dynamic envelope of a fusion Class II virus - Prefusion stages of Semliki Forest virus revealed by electron cryomicroscopy. J. Biol. Chem. 282, 6752-6762 (2007).

            Wu, H., Hollars, C., Huser, T., Parikh, A. & Yeh, Y. Characterization of lipid rafts by single-vesicle raman spectroscopy. Biophys. J., 573A-573A (2007).

            Smith, A.M., Huser, T. & Parikh, A.N. Dynamic recompartmentalization of supported lipid bilayers using focused femtosecond laser pulses. J. Am. Chem. Soc. 129, 2422-+ (2007).

            Sapuri-Butti, A.R., Butti, R.C. & Parikh, A.N. Characterization of supported membranes on topographically patterned polymeric elastomers and their applications to microcontact printing. Langmuir 23, 12645-12654 (2007).

Gojova, A., Guo, B., Kota, R.S., Rutledge, J.C., Kennedy, I.M. & Barakat, A.I. Induction of inflammation in vascular endothelial cells by metal oxide nanoparticles: Effect of particle composition. Environ. Health Perspect. 115, 403-409 (2007).

            Hom, E.F.Y., Marchis, F., Lee, T.K., Haase, S., Agard, D.A. & Sedat, J.W. AIDA: an adaptive image deconvolution algorithm with application to multi-frame and three-dimensional data. J. Opt. Soc. Am. A-Opt. Image Sci. Vis. 24, 1580-1600 (2007).

            Yao, S. & Bakajin, O. Improvements in mixing time and mixing uniformity in devices designed for studies of protein folding kinetics. Anal. Chem. 79, 5753-5759 (2007).

            Lapidus, L.J., Yao, S.H., McGarrity, K.S., Hertzog, D.E., Tubman, E. & Bakajin, O. Protein hydrophobic collapse and early folding steps observed in a microfluidic mixer. Biophys. J. 93, 218-224 (2007).

            Hok, S., Natarajan, A., Balhorn, R., DeNardo, S.J., DeNardo, G.L. & Perkins, J. Synthesis and radiolabeling of selective high-affinity ligands designed to target non-Hodgkin's lymphoma and leukemia. Bioconjugate Chem. 18, 912-921 (2007).

            Ortega, J., Maitland, D., Wilson, T., Tsai, W., Savas, O. & Saloner, D. Vascular dynamics of a shape memory polymer foam aneurysm treatment technique. Ann. Biomed. Eng. 35, 1870-1884 (2007).

            Maitland, D.J., Small, W., Ortega, J.M., Buckley, P.R., Rodriguez, J., Hartman, J. & Wilson, T.S. Prototype laser-activated shape memory polymer foam device for embolic treatment of aneurysms. J. Biomed. Opt. 12 (2007).

Small, W., Wilson, T.S., Buckley, P.R., Benett, W.J., Loge, J.A., Hartman, J. & Maitland, D.J. Prototype fabrication and preliminary in vitro testing of a shape memory endovascular thrombectomy device. IEEE Trans. Biomed. Eng. 54, 1657-1666 (2007).

            Ortega, J.M., Small, W., Wilson, T.S., Benett, W.J., Loge, J.M. & Maitland, D.J. A shape memory polymer dialysis needle adapter for the reduction of hemodynamic stress within arteriovenous grafts. IEEE Trans. Biomed. Eng. 54, 1722-1724 (2007).

            Wilson, T.S., Bearinger, J.P., Herberg, J.L., Marion, J.E., Wright, W.J., Evans, C.L. & Maitland, D.J. Shape memory polymers based on uniform aliphatic urethane networks. J. Appl. Polym. Sci. 106, 540-551 (2007).

            Hartman, J., Small, W., Wilson, T.S., Brock, J., Buckley, P.R., Benett, W.J., Loge, J.M. & Maitland, D.J. Embolectomy in a rabbit acute arterial occlusion model using a novel electromechanical extraction device. Am. J. Neuroradiol. 28, 872-874 (2007).

            Small, W., Buckley, P.R., Wilson, T.S., Benett, W.J., Hartman, J., Saloner, D. & Maitland, D.J. Shape memory polymer stent with expandable foam: A new concept for endovascular embolization of fusiform aneurysms. IEEE Trans. Biomed. Eng. 54, 1157-1160 (2007).

Marchesini, S. Phase retrieval and saddle-point optimization. J. Opt. Soc. Am. A-Opt. Image Sci. Vis. 24, 3289-3296 (2007).

            Marchesini, S. Invited article: A unified evaluation of iterative projection algorithms for phase retrieval (vol 78, art no 011301, 2007). Rev. Sci. Instrum. 78 (2007).

            Perkins, J., Parida, S. & Clavijo, A. Use of a standardized bovine serum panel to evaluate a multiplexed nonstructural protein antibody assay for serological surveillance of foot-and-mouth disease. Clin. Vaccine Immunol. 14, 1472-1482 (2007).

            Bower, B.A., Zhao, M.T., Zawadzki, R.J. & Izatt, J.A. Real-time spectral domain Doppler optical coherence tomography and investigation of human retinal vessel autoregulation. J. Biomed. Opt. 12 (2007).

            Zawadzki, R.J., Choi, S.S., Jones, S.M., Oliver, S.S. & Werner, J.S. Adaptive optics-optical coherence tomography: optimizing visualization of microscopic retinal structures in three dimensions. J. Opt. Soc. Am. A-Opt. Image Sci. Vis. 24, 1373-1383 (2007).